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| 1 |
W.Z. Antkowiak, E. Biala, P. Dembek, R. Kierzek, K. Grzeskowiak, A. Kraszewski, M. Wiewiorowski, Further studies on synthesis and properties of the protected triester nucleotides as a new key intermediate for the synthesis of oligoribonucleotides. Nucleic Acids Res., spec. publ. No 1, 133-136 (1975) |
| 2 |
R.W. Adamiak, M.Z. Barciszewska, E. Biala, K. Grzeskowiak, R. Kierzek, A. Kraszewski, W. T. Markiewicz, M. Wiewiorowski,
Nucleoside 3'-phosphotriesters as key intermediates for the oligonucleotide synthesis. An improved preparation of nucleoside 3'-phosphotriesters, their 1H NMR characterization and new condition for removal of 2-cyanoethyl group.
Nucleic Acids Res., 3, 3397-3408 (1976)
|
| 3 |
R.W. Adamiak, E. Biala, K. Grzeskowiak, R. Kierzek, A. Kraszewski, W.T. Markiewicz, J. Stawinski, M. Wiewiorowski,
Nucleoside 3'-phosphotriesters as key intermediates for the oligoribonucleotide synthesis. IV. New method for removal of 2,2,2-trichloroethyl group and 31P NMR as a new tool for analysis of deblocking of internucleotide phosphate protecting groups.
Nucleic Acids Res., 4, 2321-2329 (1977)
|
| 4 |
R.W. Adamiak, E. Biala, K. Grzeskowiak, R. Kierzek, A. Kraszewski, W.T. Markiewicz, J. Okupniak, J. Stawinski, M. Wiewiorowski,
The chemical synthesis of the anticodon loop of an eukaryotic initiator tRNA containing the hypermodified nucleoside N-(N-threonylcarbonyl)adenosine.
Nucleic Acids Res., 5, 1889-1905 (1978)
|
| 5 |
R.W. Adamiak, E. Biala, K. Grzeskowiak, R. Kierzek, A. Kraszewski, W.T. Markiewicz, J. Stawinski, M. Wiewiorowski,
Studies on polynucleotide synthesis.
in: Phosphorus Chemistry directed towards Biology, ed. W.J.Stec, Pergamon Press, Oxford New York, 9-12 (1980)
|
| 6 |
E. Biala, A.S. Jones, R.T. Walker,
Synthesis and properties of poly(5-ethynyluridylic acid).
Tetrahedron, 36,155-164 (1980)
|
| 7 |
W.T. Markiewicz, R.W. Adamiak, E. Biala, K.Grzeskowiak, R. Kierzek, A.Kraszewski, J.Stawinski, M.Wiewiorowski,
Further studies on oligoribonucleotide synthesis.
Nucleic Acids Res., symp. ser., 7, 115-127 (1980)
|
| 8 |
R. Kierzek, H. Ito, R. Bhatt, K. Itakura,
Selective N-deacylation of N,O-protected nucleosides by zinc bromide.
Tetrahedron Lett., 22, 3761-3764 (1981)
|
| 9 |
J.J. Rossi, R. Kierzek, T.Huang, P.A.Valker, K.Itakura,
An alternate method for synthesis of double stranded DNA segments.
J.Biol.Chem., 257, 9226-9229 (1982)
|
| 10 |
J.J. Rossi, R. Kierzek, T. Huang, P.A. Valker, K. Itakura,
The role of synthesis of DNA in the preparation of structural genes coding for proteins.
"From Gene to Protein: Translation into Biotechnology", Academic Press Inc., p. 213-219 (1982)
|
| 11 |
A.B. Legocki, A. Konieczny, C. Madrzak, P. Strozycki, A. Wolanski, R. Kierzek,
Nodule specific induction of host genes in yellow lupin. Structure and function of plant genomes.
O.Ciferii and Leon Dure III Eds., Plenum Press, New York, London, p. 263-267 (1983)
|
| 12 |
W.T. Markiewicz, E. Biala, R. Kierzek,
Application of the tetraisopropyldisiloxane-1,3-diyl group in the chemical synthesis of oligoribonucleotides.
Bull. Acad. Polon. Sci., ser. chim., 32, 433-451 (1984)
|
| 13 |
R.W. Adamiak, E. Biala,
Scale-up procedure for the total deprotection and purification of the chemically
synthesized oligoribonucleotides.
Nucleic Acids Res. Symp.Ser., 14, 305-309 (1984)
|
| 14 |
R. Kierzek,
The synthesis of 5'-O-dimethoxytrity- N-acyl-2'-deoxynucleosides. Improved transient protection approach.
Nucleosides and Nucleotides, 5, 641-649 (1985)
|
| 15 |
R.W. Adamiak, E. Biala, B. Skalski,
New ionic side-products in oligonucleotide synthesis: formation and reactivity of
fluorescent N-(purin-6-yl) pyridinium salts.
Nucleic Acids Res., 13, 2989-3003 (1985)
|
| 16 |
R.W. Adamiak, E. Biala, B. Skalski,
Synthesis of 6-substituted purines and ribonucleosides with N-(6-purinyl) pyridinium
Salts.
Angew. Chem. Int. Ed. Engl., 24, 1054-1055 (1985)
|
| 17 |
R.W. Adamiak, E. Biala, Z. Gdaniec, S. Mielewczyk, B. Skalski,
Reactions of nucleoside heteroaromatic lactam systems with 4-chlorophenylphosphorodichloridate and 1,2,4-triazole in pyridine.
Chemica Scripta 26, 3-6 (1986)
|
| 18 |
R.W. Adamiak, E. Biala, Z. Gdaniec, S. Mielewczyk, B. Skalski,
New observation on nucleophile assisted phosphorylation of nucleoside heteroaromatic
lactam sysytem during oligonucleotide synthesis. Formation and reactivity of ionic side products.
Chemica Scripta, 26, 7-10 (1986)
|
| 19 |
R. Kierzek, D.W. Kopp, M. Edmonds, M.H. Caruthers,
Chemical synthesis of branched RNA.
Nucleic Acids Res. 14, 4751-4764 (1986)
|
| 20 |
S.M. Freier, R. Kierzek, M.H. Caruthers, T. Neilson, D.H. Turner,
Free energy contributions of G:U and other terminal mismatches to helix stability.
Biochemistry 25, 3209-3213 (1986)
|
| 21 |
S.M. Freier, R. Kierzek, J.A. Jaeger, N. Sugimoto, M.H. Caruthers, T. Neilson, D.H. Turner,
Improved free energy parameters for predictions of RNA duplex stability.
Proc. Natl. Acad. Sci. USA, 83, 9373-9377 (1986)
|
| 22 |
D.H. Turner, S.M. Freier, N. Sugimoto, D.R. Hickey, J.A. Jaeger, A. Sinclair, D. Alkema, T. Neilson, M.H. Caruthers, R. Kierzek,
Improved parameters for prediction of RNA secondary structure and insights into why RNA forms doubles helixes.
3D Structure and dynamics of RNA /P.H. van Knippenberg, C.W. Hilbers, Bosch Eds/ Plenum New York, p 1-13 (1986) |
| 23 |
N. Sugimoto, R. Kierzek, S.M. Freier, D.H. Turner,
Energetics of internal GU mismatches in ribooligonucleotide helixes.
Biochemistry 25, 5755-5759 (1986)
|
| 24 |
S.M. Freier, N. Sugimoto, A. Sinclair, D. Alkema, T. Neilson, R. Kierzek, M.H. Caruthers, D.H. Turner,
Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: An empirical estimate of the energetics of hydrogen bonds in nucleic acids.
Biochemistry 25, 3214-3219 (1986)
|
| 25 |
R. Kierzek, M.H. Caruthers, C.E. Longfellow, D. Swinton, D.H. Turner, S.M. Freier,
Polymer supported RNA synthesis and its application to test the nearest neighbor model for duplex stability.
Biochemistry 25, 7840-7846 (1986)
|
| 26 |
M.H. Caruthers, D. Dellinger, K. Prosser, A.D. Barone, J.W. Dubendorff, R. Kierzek, M. Rosendahl,
Nucleic acid synthesis and applications to molecular biology.
Chemica Scripta 26, 25-30 (1986)
|
| 27 |
L.J. McBride, R. Kierzek, S.L. Beaucage, M.H. Caruthers,
Amidine protecting groups for oligonucleotide synthesis.
J. Am. Chem. Soc., 108, 2040-2048 (1986)
|
| 28 |
R.W. Adamiak, E. Biala, Z. Gdaniec, S. Mielewczyk, B. Skalski,
Studies directed toward introduction of N6-isopenthenyladenosine and its 2-methyl- thio-
analogs into oligoribonucleotides.
Nucleic Acids Res. Symp. Ser.,18, 105-109 (1987)
|
| 29 |
R. Kierzek, M. Rozek, W.T. Markiewicz,
Some steric aspects of synthesis of oligoribonucleotides by phosphoramidite approach on solid support.
Nucleic Acids Res., symp. ser., 18, 201-205 (1987)
|
| 30 |
W.T. Markiewicz, R. Kierzek, B. Hernes,
A new method of synthesis of 4N-alkyl substituted cytosine derivatives via 4N-arylsulfonyl or alkylsulfonyl intermediates.
Nucleosides and Nucleotides, 6, 269-273 (1987)
|
| 31 |
R. Kierzek, W.T. Markiewicz,
Synthesis of 5'-0-dimethoxytrityl-4-N-(6-trifluoroacetamidohexyl) 2'-deoxycytidine and its application in the synthesis of biotin labelled oligonucleotides.
Nucleosides and Nucleotides, 6, 463-466 (1987)
|
| 32 |
R. Kierzek, W.T. Markiewicz, B. Imiolczyk,
Synthesis of 2' 5' oligonucleotides on solid support by phosphoramidite method.
"Biophosphates and their Analogues Synthesis, Structure, Metabolism and Activity", eds. K.S. Bruzik, W.J. Stec, Elsevier Sci.Publ., 179-184 (1987)
|
| 33 |
D.H. Turner, N. Sugimoto, R. Kierzek, S.D. Dreiker,
Free energy increments for hydrogen bonds in nucleic acid base pairs.
J. Am. Chem. Soc., 109, 3783-3785 (1987)
|
| 34 |
N. Sugimoto, R. Kierzek, D.H. Turner,
Sequence dependence for the energetics of dangling ends and terminal base pairs in ribonucleic acid.
Biochemistry, 26, 4554-4559 (1987)
|
| 35 |
N. Sugimoto, R. Kierzek, D.H. Turner,
Sequence dependence for the energetics of terminal mismatches in ribooligonucleotides.
Biochemistry, 26, 4559-4562 (1987)
|
| 36 |
D.H. Turner, N. Sugimoto, J.A. Jaeger, C.E. Longfellow, S.M. Freier, R. Kierzek,
Improved parameters for prediction of RNA structure.
Cold Spring Harbor Symposia on Quantitative Biology, vol. LII, 123-133, (1987)
|
| 37 |
M.H. Caruthers, R. Kierzek, J.Y. Tang,
Synthesis of oligonucleotides using the phosphoramidite method.
"Biophosphates and their Analogues Synthesis, Structure, Metabolism and Activity", eds. K.S. Bruzik, W.J. Stec, Elsevier Sci. Publ., 3-21 (1987)
|
| 38 |
R. Kierzek, M. Rozek, W.T. Markiewicz,
Some steric aspect of synthesis of oligoribonucleotides by phosphoramidite approach on a solid support.
Bull. Pol. Ac.: Chem., 35 (11 12), 508-517 (1987)
|
| 39 |
D.H. Turner, N. Sugimoto, S.D. Dreiker, S.M. Freier, R. Kierzek,
Hydrogen bonding and stacking contributions to nucleic acid stability.
Proteins to Ribosomes, Adenine Press p. 249-259 (1988) |
| 40 |
N. Sugimoto, R. Kierzek, D.H. Turner,
Kinetics for reaction of a circularized intervening sequence with CU, UCU, CUCU, and CUCUCU: mechanistic implications from the dependence on temperature, and on oligomer and Mg+2 concentrations
Biochemistry, 27, 6384-6392 (1988)
|
| 41 |
N. Sugimoto, M. Tomka, R. Kierzek, P. Bevilacqua, D.H. Turner,
Effects of substrate structure on the kinetics of circle opening reactions of the self splicing intervening sequence from Tetrahymena thermophila: evidence for substrate and Mg+2 binding interactions
Nucleic Acids Res., 17, 355-371 (1989)
|
| 42 |
A.P. Williams, C.E. Longfellow, S.M.Freier, R. Kierzek, D.H. Turner,
Laser temperature jump, spectroscopic and thermodynamic study of salt effects on duplex formation by dGCATGC.
Biochemistry, 28, 4283-4291 (1989)
|
| 43 |
N. Sugimoto, N. Sasaki, R. Kierzek , D.H. Turner,
Binding of a fluorescent oligonucleotide to a circularized intervening sequence from Tetrahymena thermophila.
Chem. Lett., 2223-2226 (1989)
|
| 44 |
M. Welnicki, J. Skrzeczkowski, A. Soltynska, P. Jonczyk, W.T. Markiewicz, R. Kierzek, B. Imiolczyk, W. Zagorski,
Characterization of synthetic DNA probe detecting potato spindle tuber virioid.
J. Virological Methods, 24, 141-152 (1989)
|
| 45 |
R. Kierzek, W.T. Markiewicz,
A general method of synthesis of 5'-O-dimethoxytrityl 3'-O-tetrahydropyranyl-N-acylribonucleosides.
Bull. Pol. Ac.:Chem., 38, 33-40 (1990)
|
| 46 |
C.E. Longfellow, R. Kierzek , D.H. Turner,
Thermodynamic and spectroscopic study of bulge loops in oligoribonucleotides.
Biochemistry, 29, 278-285 (1990)
|
| 47 |
J. SantaLucia Jr., R. Kierzek, D.H. Turner,
Effects of G-A mismatches on the structure and thermodynamics of RNA internal loops.
Biochemistry, 29, 8813-8819 (1990)
|
| 48 |
J.D. Reilly, S.K. Freeman, R.F. Melhan, R. Kierzek, M.H. Caruthers, M. Edmonds T.W. Munns,
Antibodies specific for branched oligoribonucleotides.
Anal. Biochem., 185, 125-130 (1990)
|
| 49 |
N. Sugimoto, M. Sasaki, R. Kierzek , D.H. Turner,
Inhibition of deoxyribooligonucleotides on the circle opening of the intervening sequence from Tetrahymena thermophila.
Chem. Lett., 747-748 (1990)
|
| 50 |
G. Slim, C. Pritchard, E. Biala, U. Asseline, M. Gait,
Synthesis of site-specifically modified ologoribonucleotides for studies of the
recognition of TAR RNA by HIV-1 tat protein and studies on hammerhead
ribozymes.
Nucleic Acids Res. Symp. Ser., 24, 55-59 (1991)
|
| 51 |
J. SantaLucia Jr., R. Kierzek , D.H. Turner,
Functional group substitutions as probes of hydrogen bonding between G A mismatches in RNA internal loops.
J. Am. Chem. Soc., 113, 4313-4322 (1991)
|
| 52 |
A. Peritz, R. Kierzek, N. Sugimoto, D.H. Turner,
Thermodynamic study of internal loops in oligoribonucleotides: symmetric loops are more stable than asymmetric loops.
Biochemistry, 30, 6428-6436 (1991)
|
| 53 |
J. SantaLucia Jr., R. Kierzek, D.H. Turner,
Stabilities of consecutive A-C, C-C, G-G, U-C and U-U mismatches in RNA internal loops: evidence for stable hydrogen bonded U-U and C-C+ pairs.
Biochemistry, 30, 8242-8251 (1991)
|
| 54 |
L. He, R. Kierzek, J. SantaLucia Jr., A.E.Walter, D.H. Turner,
Nearest neighbor parameters for G U mismatches: 5'GU 3'/3'UG 5' is destabilizing in the contexts CGUG/GUGC, UGUA/AUGU and AGUU/UUGA but stabilizing in GGUC/CUGG.
Biochemistry, 30, 11124-11132 (1991)
|
| 55 |
R. Kierzek, W.T. Markiewicz,
The synthesis of 5'-O-triphosphate 4-N-(omega-aminoalkyl)deoxycytidine, a useful precursor to the generation of different labeled triphosphates.
Nucleosides and Nucleotides, 10, 1257-1275 (1991)
|
| 56 |
J. SantaLucia Jr., R. Kierzek, D.H. Turner,
Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin.
Science, 256, 217-219 (1992)
|
| 57 |
R. Kierzek, L. He, D.H. Turner,
Association of 2'-5' oligoribonucleotides.
Nucleic Acids Res., 20, 1685-1690 (1992)
|
| 58 |
R. Kierzek,
Nonenzymatic hydrolysis of oligoribonucleotides.
Nucleic Acids Res., 20, 5079-5084 (1992)
|
| 59 |
R. Kierzek,
Hydrolysis of oligoribonucleotides: influence of sequence and length.
Nucleic Acids Res., 20, 5073-5077 (1992)
|
| 60 |
P.C. Bevilacqua, R. Kierzek, K.A. Johnson, D.H. Turner,
Dynamics of ribozyme binding of substrate revealed by fluorescence detected stopped flow.
Science, 258, 1355-1358 (1992)
|
| 61 |
R. Kierzek, Y. Li, D.H. Turner, P.C. Bevilacqua,
5'-Amino pyrene provides a sensitive, non perturbing fluorescent probe of RNA secondary and tertiary structure formation.
J. Am. Chem. Soc., 115, 4985-4992 (1993)
|
| 62 |
E. Biala, J. Milecki, A. Kowalewski, M. Popenda, W.Z. Antkowiak,
Z-RNA. The synthesis of 5-methyl and 2`-O-methyl analogs of ribo-CGCGCG.
Acta Biochim. Pol., 40, 521-529 (1993)
|
| 63 |
S. Moran, R. Kierzek, D.H. Turner,
Binding of guanosine and 3'-splice site analogues to a group I ribozyme: interactions with functional groups of guanosine and additional nucleotides.
Biochemistry, 32, 5247-5257 (1993)
|
| 64 |
M. Culver, S.M. McCraith, M. Zillmann, R. Kierzek, N. Michaud. R.D. LaReau. D.H. Turner , E.M. Phizicky,
A novel NAD derivative produced during transfer RNA splicing: ADP-ribose 1''-2'' cyclic phosphate.
Science, 261, 266-208 (1993)
|
| 65 |
R. Kierzek,
The stability of trisubstituted internucleotide bond in the presence of vicinal 2'-hydroxyl. Chemical synthesis of the uridyl-(2'-phosphate)-3'-5'-uridine.
Nucleotides and Nucleosides, 13, 1757-1768 (1994)
|
| 66 |
W.B.T. Cruse, P. Saludjian, E. Biala P. Strazewski, T. Prange, O. Kennard,
Structure of a mispaired RNA double helix at 1.6 A resolution and implication for the
prediction of RNA secondary structure.
Proc. Natl. Acad. Sci. USA., 91, 4160-4165 (1994)
|
| 67 |
M. Popenda, J. Milecki, E. Biala, R.W. Adamiak,
The solutions of NMR structure of 2`-O-(13C)methyl-CGCGCG RNA duplex.
Nucleosides & Nucleotides, 14, 983-988 (1995)
|
| 68 |
A. Burdzy, B. Skalski, E. Biala, A. Kowalewski, S. Paszyc, R.W. Adamiak,
Post-synthetic transformations of oligodeoxynucleotides originated at 6-methylthio-purine site.
Nucleosides & Nucleotides, 14, 978-982 (1995)
|
| 69 |
R. Kierzek,
Wlasciwosci katalityczne kwasów rybonukleinowych (RNA) (The catalytic properties of ribonucleic acids) "Nowe tendencje w biologii molekularnej i inzynierii genetycznej" (The new trends, in molecular biology and genetic engineering), (J. Barciszewski, K. Lastowski, T. Twardowski, Editors), Sorus, Poznan, p. 137-185 (1996) |
| 70 |
A. Fischer, Z. Gdaniec, E. Biala, M. Lozynski, J. Milecki, R.W. Adamiak,
19F NMR of RNA. The structural and chemical aspects of 5-fluorocytidine and -uridine labelling of oligoribonucleotides.
Nucleosides & Nucleotides 15, 477-488 (1996)
|
| 71 |
R. Kierzek,
The effect of support and mobile phase on diastereoisomers separation of monophosphate of DNA and RNA oligomers by high performance liquid chromatography.
Collect. Czech. Chem. Commun., 61, 161-163 (1996)
|
| 72 |
R. Kierzek,
Nonenzymatic hydrolysis of oligoribonucleotides III. Stereochemistry and influence of
chimeric DNA/RNA on nonenzymatic hydrolysis of oligoribonucleotides.
Collect. Czech. Chem. Commun., 61, 253-257 (1996)
|
| 73 |
L. Profenno, R. Kierzek, S. Testa, D. Turner,
Guanosine binds to the tetrahymena ribozyme in more than one step, and its 2'-OH and the nonbridging pro-Sp-phsphoryl oxygen at the cleavage site are required for productive docking
Biochemistry, 36, 12477-12485 (1997)
|
| 74 |
M. Popenda, E. Biala, J. Milecki, R.W. Adamiak,
Solution structure of RNA duplexes containing alternating CG base pairs: NMR study of r(CGCGCG)2 and 2`-O-Me(CGCGCG)2 under low salt conditions.
Nucleic Acids Res., 25, 4589-4598 (1997)
|
| 75 |
T. Xia, J. SantaLucia, M.E. Burkard, R. Kierzek, S.J. Schroeder, C. Cox and
D.H. Turner,
Parameters for expanded nearest-neighbor model for formation of RNA duplexes with
Watson-Crick base pair.
Biochemistry, 37, 14719-14735 (1998)
|
| 76 |
S. Gunzenhauser, E. Biala, P. Strazewski,
Tetraethylene glycol-derived spacer for oligonucleotide synthesis.
Tetrahedron Lett., 39, 6277-6280 (1998)
|
| 77 |
R. Kierzek,
Wlasciwosci termodynamiczne kwasow rybonukleinowych., "Na pograniczu chemii
i biologii", H. Koroniak, J. Barciszewski, W.T. Markiewicz, K. Ziemnicki (eds),
Wydawnictwo Naukowe UAM, p. 369-416 (1998) |
| 78 |
S.L. Spinelli, R. Kierzek. D.H. Turner, E.M. Phizicky,
Transient ADP-ribosylation of a 2'-phosphate implicated in its removal from ligated tRNA during splicing in yeast.
J. Biol. Chem., 274, 2637-2644 (1999)
|
| 79 |
E. Biala, P.Strazewski,
Thermodynamics of site-specific variant tRNAAla acceptor stem microharpins. Nucleosides & Nucleotides, 18, 1575-1576 (1999)
|
| 80 |
P. Strazewski, E. Biala, K.Gabriel, W.H. McClain,
The relationship of thermodynamic stability at a GU recognition site to tRNA aminoacylation specifity.
RNA, 5, 1490-1494 (1999) |
| 81 |
E. Biala, O. Botta, E. Moyroud, P.Strazewski,
Ribonucleosides, aminoacyl- and peptidyl-RNA: synthesis, thermodynamics and structure.
Chimia, 53, 226-227 (1999)
|
| 82 |
A. Bibillo, K. Ziomek, M. Figlerowicz, R. Kierzek,
Nonenzymatic hydrolysis of oligoribonucleotides V. The elements affecting the process of self-hydrolysis.
Acta Biochemica Polonica, 46, 145-153 (1999)
|
| 83 |
A. Bibillo, M. Figlerowicz, R. Kierzek,
The nonenzymatic hydrolysis of oligoribonucleotides VI. The role of biogenic polyamines.
Nucleic Acids Res., 27, 3931-3937 (1999)
|
| 84 |
M.E. Burkard, R. Kierzek, D.H. Turner,
Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with
stacking at helix termini in larger RNAs.
J. Mol. Biol., 290, 967-982 (1999)
|
| 85 |
R. Kierzek, M.E. Burkard, D.H. Turner,
The thermodynamics of single mismatches in RNA duplxes
Biochemistry, 38, 14214-14223 (1999)
|
| 86 |
S.M. Testa, M.D. Disney, D.H. Turner, R. Kierzek,
Thermodynamics of RNA-RNA duplexes with 2- and 4-thiouridenes: implications for
antisense design and targeting a group I intron.
Biochemistry, 38, 16655-16662 (1999)
|
| 87 |
K. Ziomek, R. Kierzek,
Przewidywanie struktur drugorzedowych kwasow rybonukleinowych (RNA)
metoda termodynamiczna.
Postepy Biochemii, 45, 74-80 (1999)
|
| 88 |
K.Ziomek, R. Kierzek,
Drugorzedowe motywy strukturalne RNA.
Postepy Biochemii, 45, 80-87 (1999)
|
| 89 |
E. Moyroud, E. Biala, P. Strazewski,
Synthesis and enzymatic digestion of an RNA nonamer in both enantiomeric forms. Tetrahedron, 56, 1475-1484 (2000)
|
| 90 |
R. Kierzek, M.A. Steiger, S.L. Spinelli, D.H. Turner, E.M. Phizicky,
The chemical synthesis of oligoribonucleotides with selectively placed 2'-O-phosphates.
Nucleosides, Nucleotides & Nucleic Acids, 19, 917-933 (2000)
|
| 91 |
A. Bibillo, M. Figlerowicz, K. Ziomek, R. Kierzek,
The nonenzymatic hydrolysis of oligoribonucleotides VII. Structural elements affecting hydrolysis.
Nucleosides, Nucleotides & Nucleic Acids, 19, 977-994 (2000)
|
| 92 |
X. Chen, J.A. McDowell, R. Kierzek, T.R. Krugh, and D.H. Turner,
Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G-U pairs: one hydrogen bond for each G-U pair in r(GGCGUGCC)2 and two for each G-U pair in r(GAGUGCUC)2.
Biochemistry, 39, 8970-8982 (2000)
|
| 93 |
X. Chen, R. Kierzek and D.H. Turner,
Stability and Structure of RNA Duplexes containing Isoguanosine and Isocytidine.
J. Am. Che. Soc., 123, 1267-1274 (2001)
|
| 94 |
E. Kierzek, R. Kierzek,
Influence of N6-isopentenyladenosine (i6A) on thermal stability of RNA duplexes.
Biophysical Chemistry, 91, 135-140 (2001)
|
| 95 |
R. Kierzek,
Nonenzymatic cleavage of oligoribonucleotides.
Methods in Enzymology, vol 341A, p. 657-675, Ed. A.W. Nicholson, Academic Press, San Diego, London, Boston, New York, Sydney, Tokyo, Toronto (2001)
|
| 96 |
M. Alejska, A. Kurzynska-Kokorniak, M. Broda, R. Kierzek and M. Figlerowicz,
How RNA viruses exchange their genetic material.
Acta Biochimica Polonica, 48, 391-407 (2001).
|
| 97 |
E. Kierzek, E. Biala and R. Kierzek,
Elements of thermodynamics in RNA evolution.
Acta Biochemica Polonica, 48, 485-493 (2001) |
| 98 |
K. Ziomek, E. Kierzek, E. Biala and R. Kierzek,
The thermal stability of RNA duplexes containing modified base pairs placed at internal and terminal positions of the oligoribonucleotides.
Biophysical Chemistry, 97, 233-241 (2002)
|
| 99 |
K. Ziomek, E. Kierzek, E. Biala and R. Kierzek,
The influence of various modified nucleotides placed as 3'-dangling end on thermal stability of RNA duplexes.
Biophysical Chemistry, 97, 243-249 (2002)
|
| 100 |
D.E. Proctor, E. Kierzek, R. Kierzek and P.C. Bevilacqua,
Restricting the conformational heterogeneity of RNA by specific incorporation of 8-bromoguanosine.
J. Am. Chem. Soc., 125, 2390-2391 (2003)
|
| 101 |
E. Kierzek and R. Kierzek,
The synthesis of oligoribonucleotides containing N6-alkyladenosines and 2-methylthio-N6-alkyladenosines via post-synthetic modifications of precursor oligomers.
Nucleic Acids Research, 31, 4461-4471 (2003)
|
| 102 |
E. Kierzek and R. Kierzek,
The thermodynamic stability of RNA duplexes and hairpins containing N6-alkyladenosines and 2-methylthio-N6-alkyladenosines
Nucleic Acids Research, 31, 4472-4480 (2003)
|
| 103 |
S. Terenzi S. E. Biala E. N,Q. Nguyen-Trung and P. Strazewski,
Amphiphilic 3'-peptydyl-RNA conjugates
Angewandte Chemie Internat. Edition, 42, 2909-2912 (2003)
|
| 104 |
E. Kierzek, R. Kierzek,
The synthesis of oligoribonucleotides containing N6-alkyladenosines and 2-methylthio-N6-alkyladenosines.
Current Protocols in Nucleic Acids Chemistry 4.23.1-4.23.21 John Wiley & Sons, Inc
(2004) |
| 105 |
R. Kierzek,
Structural considerations for the spontaneous cleavage of RNA.
Proceeding in Nucleic Acids and Molecular Biology, Vol. 13, p. 33-48, Artificial nucleases, M.A. Zenkova (Ed.), Springer-Verlag, Berlin Heidelberg (2004) |
| 106 |
J. Proctor, H. Ma, E. Kierzek, R. Kierzek, M. Gruebele, and P. C. Bevilacqua,
Folding Thermodynamics and Kinetics of YNMG RNA Hairpins: Specific Incorporation of 8-Bromoguanosine Leads to Stabilization by Enhancement of the Folding Rate.
Biochemistry, 43, 14004-14014 (2004)
|
| 107 |
M. Lewdorowicz, Y.Yoffe, J. Zuberek, J. Jemielity, J. Stepinski, R. Kierzek,
R. Stolarski, M. Shapira and E. Darzynkiewicz,
Chemical synthesis and binding activity of trypanosomatid cap-4 structure
RNA, 10, 1469-1478 (2004)
|
| 108 |
M. Broda, R. Kierzek,
Mutacje dynamiczne trojnukleotydowych powtorzen DNA w genomie czlowieka oraz ich zwiazek z chorobami neurologicznymi. redaktorzy - H.Koroniak, J.Barciszewsk (eds), "Na pograniczu biologii i chemii", Wydawnictwo Naukowe UAM, p. 51-95 (2004)
|
| 109 |
E. Kierzek, A. Ciesielska, K. Pasternak, D.H. Mathews, D.H. Turner
and R. Kierzek,
The influence of locked nucleic acid residues on thermodynamic properties of 2'-O-methyl RNA/RNA hetroduplexes.
Nucleic Acids Research, 33, 5082-5093 (2005)
|
| 110 |
P. Kedziora, M. Figlerowicz, P. Formanowicz, M. Alejska, P. Jackowiak, N. Malinowska, A. Fratczak, J. Blazewicz, M. Figlerowicz,
Computational methods in diagnostics of chronic hepatitis C. Bulletin of the Polish
Academy of Sciences; Technical Sciences, 53, 273-281 (2005)
|
| 111 |
M. Broda, E. Kierzek, Z. Gdaniec, T. Kulinski and R. Kierzek,
Thermodynamic stability of RNA structures formed by CNG trinucleotide repeats.
Implication for prediction of RNA structure.
Biochemistry, 44, 10873-10882 (2005)
|
| 112 |
M. Lewdorowicz, J. Jemielity, R. Kierzek, M. Shapira, J. Stepinski, R. Stolarski,
and E. Darzynkiewicz,
Solid-support synthesis of 5' mRNA CAP-4 from trypanosomatides.
Collection symposium Series, 7, 433-435 (2005)
|
| 113 |
E. Kierzek, R. Kierzek, D. H. Turner and I. E. Catrina,
Facilitating RNA Structure Prediction with Microarrays,
Biochemistry, 45, 581-593 (2006)
|
| 114 |
H. Ma, D.J. Proctor, E. Kierzek, R. Kierzek, P.C. Bevilacqua and M. Gruebele,
Exploring the Energy landscape of a small RNA hairpin.
J. Am. Chem. Soc., 128, 1523-1530 (2006)
|
| 115 |
E. Kierzek, D.H. Mathews, A. Ciesielska, D.H. Turner and R. Kierzek,
Nearest neighbor parameters for Watson-Crick complementary heteroduplex formed between 2'-O-methyl RNA and RNA oligonucleotides.
Nucleic Acids Research, 34, 3609-3614 (2006)
|
| 116 |
R. Yajima, D.J. Proctor, R. Kierzek, E. Kierzek, P. C. Bevilacqua,
A conformationally restricted guanosine analogue reveals the catalytic relevance of three structures of an RNA enzyme.
Chemistry and Biology, 14, 23-30 (2007)
|
| 117 |
A. Pasternak, E. Kierzek, K. Pasternak, D. H. Turner and R. Kierzek,
A chemical synthesis of LNA-2,6-diaminopurine riboside, and the influence of
2'-O-methyl-2,6-diaminopurine and LNA-2,6-diaminopurine ribosides on the
thermodynamic properties of 2'-O-methyl RNA/RNA heteroduplexes.
Nucleic Acids Research, 35, 4055-4063, (2007)
|
| 118 |
C. Gang, R. Kierzek, I. Yildirim, T. R. Krugh, D.H. Turner and S.D. Kennedy,
Stacking Effects on Local Structure in RNA: The Structure of Tandem GA Pairs Changes When Flanking GC Pairs are Replaced by isoG-isoC Pairs
J. Phys. Chem. B, 111, 6718-6727 (2007)
|
| 119 |
M. Lewdorowicz, J. Jemielity, R. Kierzek, M. Shapira, J. Stepinski, R. Stolarski,
and E. Darzynkiewicz,
Solid-supported synthesis of 5' mRNA CAP-4 from Trypanosomatides.
Nucleosides, Nucleotides and Nucleic Acids, 26, 1329-133 (2007)
|
| 120 |
M. Lewdorowicz, J. Stepinski, J. Jemielity, J. Zuberek, R. Kierzek, M. Shapira,
J. Stepinski and E. Darzynkiewicz,
Syntheisis of 5'-mRNA CAP analogues (CAP-2 and CAP3) from Leishmana.
Nucleosides, Nucleotides and Nucleic Acids, 26, 1339-1348 (2007)
|
| 121 |
E. Kierzek, A. Fratczak, A. Pasternak, D. H. Turner and R. Kierzek,
Isoenergetic RNA microarrays, a new method to study the structure and
interactions of RNA.
2nd European Conference on Chemistry for Life Sciences, Wroclaw,
Medimond, International Proceedings Division, p. 25-30, Bologna, Italy
(2007) |
| 122 |
A. Pasternak, E. Kierzek, K. Pasternak, A. Fratczak, D.H. Turner and R. Kierzek,
The thermodynamics of 3'-terminal pyrene and guanosine for the design of isoenergetic 2'-O-methyl-RNA-LNA chimeric oligonucleotide probes of RNA structure.
Biochemistry, 47, 1249-1258 (2008)
|
| 123 |
E. Kierzek, R. Kierzek, W. Moss, S. Christensen, T. Eickbush; D.H. Turner,
Isoenergetic Penta- and Hexanucleotide Microarray Probing and Chemical Mapping Provide a Secondary Structure Model for an RNA Element Orchestrating R2 Retrotransposon Protein Function.
Nucleic Acids Research, 36, 1770-1782 (2008)
|
| 124 |
A. Pasternak, R. Kierzek,
Modyfikowane nukleotydy jako narzedzia molekularne sluzace do kontrolowanej zmiany wlasciwosci fizykochemicznych RNA.
Na pograniczu chemii i biologii, tom XVII, p. 41-87, Wydawnictwo UAM (2008)
|
| 125 |
K. Kubiak, J. Kazmierczak-Baranska, E. Sochacka, R. Kierzek, M. Janicka, K.Brzuska and B. Nawrot,
Modulation of silencing activity of siRNAs by chemical modifications.
Collection symposium series, 70, 264-267 (2008)
|
| 126 |
A. Pasternak, R. Kierzek, Z. Gdaniec and M. Gdaniec,
A locked derivative of 8-aza-7-deazaadenosine
Acta Crystalographica, C64, 467-470 (2008)
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